PDestTol2pA*: Difference between revisions
Hggenusrwki (talk | contribs) Created page with "== Construction Details == This template is used to display DNA sequence information in a standardized format. == Crude Map == photo showing locations of components == Sequence == * Annotated Sequence: (Genbank format) link * Full-Length Sequence with individual component sequences included: (FASTA file) link == Reference == This template is used to display DNA sequence information in a standardized format." |
Hggenusrwki (talk | contribs) No edit summary |
||
| (9 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
== Construction Details == | == Construction Details == | ||
pDestTol2pA was built by Clemens Grabher. The R4-R3 cassette including the attR4 recombination site, ccdB gene, chloramphenicol resistance gene and the attR3 recombination site was amplified by PCR from the original pDESTR4-R3 vector (Invitrogen) using the following primers: | |||
<code> | |||
M13 REV/XHOI: 5’-ACCGGTCTCGAGCAGGAAACAGCTATGAC-3’ | |||
</code> and <code> | |||
M13 FWD/CLAI/KPNI: 5’-AGCCGTATCGATGGTACCGTAAAACGACGGCCAG-3’. | |||
</code> | |||
The PCR product was subcloned into pCRII using the TOPO TA cloning kit (Invitrogen) and verified by sequencing. Subsequently, the insert was subcloned into the Tol2 vector pT2KXIGDin (K. Kawakami) using ClaI/XhoI, resulting in the Tol2 destination vector pDestTol2pA | |||
== Sequence == | == Crudely Annotated Sequence == | ||
FASTA file with the full-length sequence as well as sequences of individual components): pDestTol2pA sequence | |||
Edited 7 June 2007 to add six bases (a KpnI site that was missing). | |||
== Crude Map == | |||
== | Screenshot from Sequencher showing locations of components: | ||
PDestTol2pA.png | |||
Latest revision as of 17:01, 13 March 2025
Construction Details
pDestTol2pA was built by Clemens Grabher. The R4-R3 cassette including the attR4 recombination site, ccdB gene, chloramphenicol resistance gene and the attR3 recombination site was amplified by PCR from the original pDESTR4-R3 vector (Invitrogen) using the following primers:
M13 REV/XHOI: 5’-ACCGGTCTCGAGCAGGAAACAGCTATGAC-3’
and
M13 FWD/CLAI/KPNI: 5’-AGCCGTATCGATGGTACCGTAAAACGACGGCCAG-3’.
The PCR product was subcloned into pCRII using the TOPO TA cloning kit (Invitrogen) and verified by sequencing. Subsequently, the insert was subcloned into the Tol2 vector pT2KXIGDin (K. Kawakami) using ClaI/XhoI, resulting in the Tol2 destination vector pDestTol2pA
Crudely Annotated Sequence
FASTA file with the full-length sequence as well as sequences of individual components): pDestTol2pA sequence
Edited 7 June 2007 to add six bases (a KpnI site that was missing).
Crude Map
Screenshot from Sequencher showing locations of components: PDestTol2pA.png